Transcript: lnc-USP6NL-11:2

Basic information

LNCipedia transcript ID: lnc-USP6NL-11:2 
LNCipedia gene ID: lnc-USP6NL-11
Ensembl Gene ID: ENSG00000228636
Ensembl Transcript ID: ENST00000419836
Location (hg38): chr10:9758783-9759237
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017924; ENST00000419836; ENST00000419836.1; RP5-1051H14.2-001; OTTHUMT00000046737.1
Alternative gene names: XLOC_008726; linc-KIN-3; ENSG00000228636; RP5-1051H14.2; ENSG00000228636.1; OTTHUMG00000017654.1; AL157401.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.7722 non-coding 
CPAT coding probability 8.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf31-7:1
3.1 lnc-C10orf31-11:1
4.0 lnc-C10orf31-11:1
4.1 lnc-C10orf31-11:1
5.0 lnc-C10orf31-11:1
5.1 lnc-KLF6-124:2
5.2 lnc-USP6NL-11:2