Transcript: lnc-SLC22A18-8:2

Basic information

LNCipedia transcript ID: lnc-SLC22A18-8:2 
LNCipedia gene ID: lnc-SLC22A18-8
Ensembl Gene ID: ENSG00000234791
Ensembl Transcript ID: ENST00000455154
Location (hg38): chr11:3189546-3189929
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 293 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019136; ENST00000455154.1; AC108448.3-001; OTTHUMT00000032331.1; NONHSAT017562
Alternative gene names: XLOC_009029; linc-ART1-5; ENSG00000234791.1; AC108448.3; OTTHUMG00000011701.1; AC108448.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.6905 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A18-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C11orf36-1:1
3.1 lnc-C11orf36-2:1
4.0 lnc-C11orf36-2:1
4.1 lnc-C11orf36-2:1
5.0 lnc-C11orf36-2:1
5.1 lnc-OR51M1-59:2
5.2 lnc-SLC22A18-8:2