Transcript: lnc-C1QL4-3:2

Basic information

LNCipedia transcript ID: lnc-C1QL4-3:2 
LNCipedia gene ID: lnc-C1QL4-3
Location (hg38): chr12:49279053-49282985
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2535 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000514443; TCONS_00020244; NONHSAT028094
Alternative gene names: ENSG00000250773; XLOC_010068; linc-TUBA1A-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.8337 non-coding 
CPAT coding probability 18.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C1QL4-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1QL4-3:1
3.1 lnc-C1QL4-3:2
4.0 lnc-C1QL4-3:2
4.1 lnc-C1QL4-3:2
5.0 lnc-C1QL4-3:2
5.1 lnc-RACGAP1-18:1
5.2 lnc-C1QL4-3:2