Transcript: lnc-SCP2D1-1:1

Basic information

LNCipedia transcript ID: lnc-SCP2D1-1:1 
LNCipedia gene ID: lnc-SCP2D1-1
RefSeq ID: NR_026885
Location (hg38): chr20:18794049-18796065
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2017 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT078848; NR_026885; NR_026885.1
Alternative gene names: LOC100270804


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7537 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCP2D1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf79-1:3
4.0 lnc-C20orf79-1:3
4.1 lnc-C20orf79-1:3
5.0 lnc-C20orf79-1:3
5.1 lnc-CFAP61-13:1
5.2 lnc-SCP2D1-1:1