Transcript: lnc-SCP2D1-1:8

Basic information

LNCipedia transcript ID: lnc-SCP2D1-1:8 
LNCipedia gene ID: lnc-SCP2D1-1
Ensembl Gene ID: ENSG00000273148
Ensembl Transcript ID: ENST00000609087
Location (hg38): chr20:18794529-18796067
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1539 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609087.1
Alternative gene names: ENSG00000273148.1; RP5-1068E13.7; AL035563.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7537 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCP2D1-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf79-1:4
4.0 lnc-C20orf79-1:4
4.1 lnc-C20orf79-1:4
5.0 lnc-C20orf79-1:4
5.1 lnc-CFAP61-13:8
5.2 lnc-SCP2D1-1:8