Transcript: LINC00189:16

Basic information

LNCipedia transcript ID: LINC00189:16 
LNCipedia gene ID: LINC00189
Location (hg38): chr21:29288286-29289024
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 739 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT081634; FPKM1_group_20056_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.0824 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00189:16 yes no no no

Available literature

  1. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf7-4:1
4.0 lnc-C21orf7-4:1
4.1 LINC00189:16
5.0 LINC00189:16
5.1 LINC00189:16
5.2 LINC00189:16