Transcript: lnc-C5orf38-4:1

Basic information

LNCipedia transcript ID: lnc-C5orf38-4:1 
LNCipedia gene ID: lnc-C5orf38-4
Location (hg38): chr5:3036671-3042953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1454 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009846; NONHSAT100112
Alternative gene names: XLOC_004258; linc-IRX1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.5935 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C5orf38-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf38-4:1
3.1 lnc-C5orf38-4:1
4.0 lnc-C5orf38-4:1
4.1 lnc-C5orf38-4:1
5.0 lnc-C5orf38-4:1
5.1 lnc-CARD6-349:2
5.2 lnc-C5orf38-4:1