Transcript: lnc-SLC9A3-5:1

Basic information

LNCipedia transcript ID: lnc-SLC9A3-5:1 
LNCipedia gene ID: lnc-SLC9A3-5
Location (hg38): chr5:403731-404546
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 816 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT099854
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.3784 non-coding 
CPAT coding probability 84.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC9A3-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf55-3:1
4.0 lnc-C5orf55-3:1
4.1 lnc-C5orf55-3:1
5.0 lnc-C5orf55-3:1
5.1 lnc-IRX2-52:1
5.2 lnc-SLC9A3-5:1