Transcript: LINC02487:5

Basic information

LNCipedia transcript ID: LINC02487:5 
LNCipedia gene ID: LINC02487
Location (hg38): chr6:167679626-167696290
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3867 bp
Exons: 6
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011243; NONHSAT116107
Alternative gene names: XLOC_005923; linc-TCP10-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4577 non-coding 
CPAT coding probability 6.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02487:5 no no no no

Available literature

  1. Feng (2017), Transcriptome analysis reveals differentially expressed lncRNAs between oral squamous cell carcinoma and healthy oral mucosa., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf123-2:1
3.1 lnc-C6orf123-2:1
4.0 lnc-C6orf123-2:1
4.1 lnc-C6orf123-2:1
5.0 lnc-C6orf123-2:1
5.1 LINC02487:2
5.2 LINC02487:5