Transcript: lnc-C6orf141-2:1

Basic information

LNCipedia transcript ID: lnc-C6orf141-2:1 
LNCipedia gene ID: lnc-C6orf141-2
Ensembl Gene ID: ENSG00000226733
Ensembl Transcript ID: ENST00000415106
Location (hg38): chr6:50093711-50099282
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 692 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011310; ENST00000415106; ENST00000415106.1; RP11-397G17.1-001; OTTHUMT00000040877.1
Alternative gene names: XLOC_005315; linc-TFAP2D-2; ENSG00000226733; RP11-397G17.1; ENSG00000226733.1; OTTHUMG00000014829.1; ENSG00000226733.2; AL138826.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.2688 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C6orf141-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf141-1:1
3.1 lnc-C6orf141-2:1
4.0 lnc-C6orf141-2:1
4.1 lnc-C6orf141-2:1
5.0 lnc-C6orf141-2:1
5.1 lnc-EFHC1-30:4
5.2 lnc-C6orf141-2:1