Transcript: lnc-SLC18B1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC18B1-1:1 
LNCipedia gene ID: lnc-SLC18B1-1
Location (hg38): chr6:132804374-132813463
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 640 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012278; NONHSAT114975
Alternative gene names: XLOC_005834; linc-C6orf192-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.8861 non-coding 
CPAT coding probability 6.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC18B1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf192-1:1
3.1 lnc-C6orf192-1:1
4.0 lnc-C6orf192-1:1
4.1 lnc-C6orf192-1:1
5.0 lnc-C6orf192-1:1
5.1 lnc-OLIG3-80:1
5.2 lnc-SLC18B1-1:1