Transcript: lnc-LSMEM1-2:3

Basic information

LNCipedia transcript ID: lnc-LSMEM1-2:3 
LNCipedia gene ID: lnc-LSMEM1-2
Location (hg38): chr7:112618053-112620644
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014196; NONHSAT122794
Alternative gene names: XLOC_006210; linc-FOXP2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.1214 non-coding 
CPAT coding probability 8.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LSMEM1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf53-2:2
3.1 lnc-C7orf53-2:2
4.0 lnc-C7orf53-2:2
4.1 lnc-C7orf53-2:2
5.0 lnc-C7orf53-2:2
5.1 lnc-MDFIC-16:3
5.2 lnc-LSMEM1-2:3