Transcript: lnc-LSMEM1-2:1

Basic information

LNCipedia transcript ID: lnc-LSMEM1-2:1 
LNCipedia gene ID: lnc-LSMEM1-2
Location (hg38): chr7:112617504-112626224
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1399 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT122792; FPKM1_group_30186_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.1214 non-coding 
CPAT coding probability 8.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LSMEM1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C7orf53-2:5
4.0 lnc-C7orf53-2:5
4.1 lnc-C7orf53-2:5
5.0 lnc-C7orf53-2:5
5.1 lnc-MDFIC-16:1
5.2 lnc-LSMEM1-2:1