Transcript: lnc-CHRAC1-8:3

Basic information

LNCipedia transcript ID: lnc-CHRAC1-8:3 
LNCipedia gene ID: lnc-CHRAC1-8
Ensembl Gene ID: ENSG00000253574
Ensembl Transcript ID: ENST00000521883
Location (hg38): chr8:139914799-139916620
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 319 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521883.1; RP11-284H18.1-001; OTTHUMT00000377785.1; NONHSAT129357
Alternative gene names: ENSG00000253574.1; RP11-284H18.1; OTTHUMG00000164204.1; ENSG00000253574.5; AC021744.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.0109 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHRAC1-8:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8orf17-1:2
4.0 lnc-C8orf17-1:2
4.1 lnc-C8orf17-1:2
5.0 lnc-C8orf17-1:2
5.1 lnc-GPT-108:3
5.2 lnc-CHRAC1-8:3