Transcript: lnc-CADM2-3:6

Basic information

LNCipedia transcript ID: lnc-CADM2-3:6 
LNCipedia gene ID: lnc-CADM2-3
Location (hg38): chr3:83953650-84054125
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6388 bp
Exons: 6
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006118; NONHSAT090645
Alternative gene names: XLOC_002722; linc-CADM2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.352 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CADM2-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM2-3:2
3.1 lnc-CADM2-3:6
4.0 lnc-CADM2-3:6
4.1 lnc-CADM2-3:6
5.0 lnc-CADM2-3:6
5.1 lnc-CADM2-3:6
5.2 lnc-CADM2-3:6