Transcript: lnc-CALCA-1:1

Basic information

LNCipedia transcript ID: lnc-CALCA-1:1 
LNCipedia gene ID: lnc-CALCA-1
Location (hg38): chr11:14987671-14988694
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1024 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT018147
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 94.4469 coding 
CPAT coding probability 31.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CALCA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCA-1:1
4.0 lnc-CALCA-1:1
4.1 lnc-CALCA-1:1
5.0 lnc-CALCA-1:1
5.1 lnc-COPB1-8:1
5.2 lnc-CALCA-1:1

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