Transcript: lnc-CARNS1-1:1

Basic information

LNCipedia transcript ID: lnc-CARNS1-1:1 
LNCipedia gene ID: lnc-CARNS1-1
Location (hg38): chr11:67412691-67413567
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 312 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000541406.1; AP003419.15-001; OTTHUMT00000397664.1; NONHSAT022418
Alternative gene names: ENSG00000255698.1; AP003419.15; OTTHUMG00000168037.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.5851 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CARNS1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CARNS1-1:1
4.0 lnc-CARNS1-1:1
4.1 lnc-CARNS1-1:1
5.0 lnc-CARNS1-1:1
5.1 lnc-GSTP1-13:1
5.2 lnc-CARNS1-1:1

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