Transcript: lnc-VPS50-1:13

Basic information

LNCipedia transcript ID: lnc-VPS50-1:13 
LNCipedia gene ID: lnc-VPS50-1
Location (hg38): chr7:92938592-92939251
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 660 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_chen_AI133413_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.9608 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS50-1:13 no no no no

Available literature

  1. Cao (2016), Microarray profiling of bone marrow long non-coding RNA expression in Chinese pediatric acute myeloid leukemia patients., Oncol. Rep.
  2. Wang (2015), Genome-Wide Microarray Analysis of Long Non-Coding RNAs in Eutopic Secretory Endometrium with Endometriosis., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC132-1:1
4.0 lnc-CCDC132-1:1
4.1 lnc-CCDC132-1:1
5.0 lnc-CCDC132-1:1
5.1 lnc-LAMTOR4-100:13
5.2 lnc-VPS50-1:13