Transcript: lnc-WASHC3-4:1

Basic information

LNCipedia transcript ID: lnc-WASHC3-4:1 
LNCipedia gene ID: lnc-WASHC3-4
Location (hg38): chr12:101923781-101924821
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 585 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020896; NONHSAT030310
Alternative gene names: XLOC_010173; linc-GNPTAB


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.0581 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WASHC3-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC53-2:1
3.1 lnc-CCDC53-2:1
4.0 lnc-CCDC53-2:1
4.1 lnc-CCDC53-2:1
5.0 lnc-CCDC53-2:1
5.1 lnc-NUP37-4:1
5.2 lnc-WASHC3-4:1