Transcript: LINC02553:3

Basic information

LNCipedia transcript ID: LINC02553:3 
HGNC Gene Symbol: LINC02553    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2553
Ensembl Gene ID: ENSG00000255039
Ensembl Transcript ID: ENST00000529088
Location (hg38): chr11:97222644-97259987
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 734 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529088; ENST00000529088.1; RP11-882G5.1-001; OTTHUMT00000395473.1; NONHSAT023819
Alternative gene names: ENSG00000255039; RP11-882G5.1; ENSG00000255039.1; OTTHUMG00000167664.1; LINC02553


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.6891 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02553:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC82-2:1
3.1 lnc-CCDC82-2:1
4.0 lnc-CCDC82-2:1
4.1 lnc-CCDC82-2:1
5.0 lnc-CCDC82-2:1
5.1 LINC02553:2
5.2 LINC02553:3