Transcript: LINC01762:30

Basic information

LNCipedia transcript ID: LINC01762:30 
LNCipedia gene ID: LINC01762
Location (hg38): chr1:116493023-116499212
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2295 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456414; ENST00000456414.1; RP5-1086K13.1-001; OTTHUMT00000051445.2; NONHSAT005448
Alternative gene names: ENSG00000224950; RP5-1086K13.1; ENSG00000224950.1; OTTHUMG00000019417.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.3449 non-coding 
CPAT coding probability 30.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01762:30 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD58-1:1
3.1 lnc-CD58-1:1
4.0 lnc-CD58-1:1
4.1 lnc-ATP1A1OS-2:19
5.0 lnc-ATP1A1OS-2:19
5.1 LINC01762:6
5.2 LINC01762:30