Transcript: lnc-CDH6-3:2

Basic information

LNCipedia transcript ID: lnc-CDH6-3:2 
LNCipedia gene ID: lnc-CDH6-3
RefSeq ID: NR_109948
Location (hg38): chr5:29065244-29073223
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4805 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109948; NR_109948.1
Alternative gene names: LOC101929645


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.5975 non-coding 
CPAT coding probability 8.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH6-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH6-3:2
4.0 lnc-CDH6-3:2
4.1 lnc-CDH6-3:2
5.0 lnc-CDH6-3:2
5.1 lnc-CARD6-143:2
5.2 lnc-CDH6-3:2