Transcript: lnc-CHD7-1:1

Basic information

LNCipedia transcript ID: lnc-CHD7-1:1 
LNCipedia gene ID: lnc-CHD7-1
Ensembl Gene ID: ENSG00000255289
Ensembl Transcript ID: ENST00000373384
Location (hg38): chr8:60660820-60664530
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000373384; ENST00000373384.4; RP11-91I20.1-001; OTTHUMT00000383467.1; NONHSAT126848
Alternative gene names: ENSG00000255289; RP11-91I20.1; ENSG00000255289.1; OTTHUMG00000165331.1; AC068389.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.6521 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD7-1:1
3.1 lnc-CHD7-1:1
4.0 lnc-CHD7-1:1
4.1 lnc-CHD7-1:1
5.0 lnc-CHD7-1:1
5.1 lnc-SDCBP-35:1
5.2 lnc-CHD7-1:1