Transcript: lnc-CHST1-5:3

Basic information

LNCipedia transcript ID: lnc-CHST1-5:3 
LNCipedia gene ID: lnc-CHST1-5
Ensembl Gene ID: ENSG00000254746
Ensembl Transcript ID: ENST00000525855
Location (hg38): chr11:45531320-45542473
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525855; ENST00000525855.1; RP11-958J22.1-004; OTTHUMT00000390124.1; NONHSAT019033
Alternative gene names: ENSG00000254746; RP11-958J22.1; ENSG00000254746.1; OTTHUMG00000166510.1; ENSG00000254746.5; AC103855.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.1862 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST1-5:3
3.1 lnc-CHST1-5:3
4.0 lnc-CHST1-5:3
4.1 lnc-CHST1-5:3
5.0 lnc-CHST1-5:3
5.1 lnc-RAG2-51:3
5.2 lnc-CHST1-5:3