Transcript: lnc-CHST2-6:2

Basic information

LNCipedia transcript ID: lnc-CHST2-6:2 
LNCipedia gene ID: lnc-CHST2-6
Location (hg38): chr3:143095597-143098033
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2437 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003eub_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 74.1167 coding 
CPAT coding probability 55.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHST2-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHST2-6:2
4.0 lnc-CHST2-6:2
4.1 lnc-CHST2-6:2
5.0 lnc-CHST2-6:2
5.1 lnc-PXYLP1-29:2
5.2 lnc-CHST2-6:2