Transcript: LINC02503:4

Basic information

LNCipedia transcript ID: LINC02503:4 
HGNC Gene Symbol: LINC02503    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2503
Ensembl Gene ID: ENSG00000249614
Ensembl Transcript ID: ENST00000510505
Location (hg38): chr4:103961616-104036923
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 812 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007581; ENST00000510505; ENST00000510505.1; RP11-703G6.1-001; OTTHUMT00000365989.1; NONHSAT097644
Alternative gene names: XLOC_003630; linc-TET2-4; ENSG00000249614; RP11-703G6.1; ENSG00000249614.1; OTTHUMG00000161751.1; LINC02503


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.8968 non-coding 
CPAT coding probability 74.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02503:4 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CISD2-4:1
3.1 lnc-CISD2-5:1
4.0 lnc-CISD2-5:1
4.1 lnc-CISD2-5:1
5.0 lnc-CISD2-5:1
5.1 LINC02503:2
5.2 LINC02503:4