Transcript: lnc-CNTN6-1:1

Basic information

LNCipedia transcript ID: lnc-CNTN6-1:1 
LNCipedia gene ID: lnc-CNTN6-1
Ensembl Gene ID: ENSG00000235158
Ensembl Transcript ID: ENST00000451707
Location (hg38): chr3:1008135-1012934
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3699 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005488; ENST00000451707; ENST00000451707.1; AC087430.1-001; OTTHUMT00000337493.1; NONHSAT087576
Alternative gene names: XLOC_002566; linc-CNTN6-1; ENSG00000235158; AC087430.1; ENSG00000235158.1; OTTHUMG00000154883.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5132 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNTN6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTN6-1:1
3.1 lnc-CNTN6-1:1
4.0 lnc-CNTN6-1:1
4.1 lnc-CNTN6-1:1
5.0 lnc-CNTN6-1:1
5.1 lnc-CAV3-50:1
5.2 lnc-CNTN6-1:1