Transcript: lnc-COX7A2L-4:2

Basic information

LNCipedia transcript ID: lnc-COX7A2L-4:2 
LNCipedia gene ID: lnc-COX7A2L-4
Ensembl Gene ID: ENSG00000224875
Ensembl Transcript ID: ENST00000422013
Location (hg38): chr2:42143238-42170231
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 657 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422013.2; AC083949.1-001; OTTHUMT00000327071.2; NONHSAT070315
Alternative gene names: ENSG00000224875.2; AC083949.1; OTTHUMG00000152629.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -294.1845 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX7A2L-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COX7A2L-1:2
4.0 lnc-COX7A2L-4:2
4.1 lnc-COX7A2L-4:2
5.0 lnc-COX7A2L-4:2
5.1 lnc-MAP4K3-64:7
5.2 lnc-COX7A2L-4:2

loading