Transcript: MYOSLID:16

Basic information

LNCipedia transcript ID: MYOSLID:16 
HGNC Gene Symbol: MYOSLID    
HGNC Full Gene Name: myocardin-induced smooth muscle lncRNA, inducer of differentiation
Ensembl Gene ID: ENSG00000229647
Ensembl Transcript ID: ENST00000430494
Location (hg38): chr2:207239811-207245887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 974 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003088; ENST00000430494; ENST00000430494.1; AC007879.7-002; OTTHUMT00000337057.1; NONHSAT076596
Alternative gene names: XLOC_001826; linc-CREB1-1; ENSG00000229647; AC007879.7; ENSG00000229647.1; OTTHUMG00000154787.1; MYOSLID


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.0088 non-coding 
CPAT coding probability 12.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYOSLID:16 no no no no

Available literature

  1. Zhao (2016), MYOSLID Is a Novel Serum Response Factor-Dependent Long Noncoding RNA That Amplifies the Vascular Smooth Muscle Differentiation Program., Arterioscler. Thromb. Vasc. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPO-5:2
3.1 lnc-CPO-5:2
4.0 lnc-CPO-5:2
4.1 lnc-CPO-5:2
5.0 lnc-CPO-5:2
5.1 MYOSLID:8
5.2 MYOSLID:16