Transcript: lnc-CYP7A1-1:5

Basic information

LNCipedia transcript ID: lnc-CYP7A1-1:5 
LNCipedia gene ID: lnc-CYP7A1-1
Location (hg38): chr8:58259859-58272042
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 205 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Hangauer et al., 2013
Alternative transcript names: ENST00000518779; ENST00000518779.1; RP11-716D16.1-003; OTTHUMT00000378100.1; FPKM1_group_31381_transcript_1
Alternative gene names: ENSG00000253281; RP11-716D16.1; ENSG00000253281.1; OTTHUMG00000164285.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.8419 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYP7A1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYP7A1-1:5
3.1 lnc-CYP7A1-1:5
4.0 lnc-CYP7A1-1:5
4.1 lnc-CYP7A1-1:5
5.0 lnc-CYP7A1-1:5
5.1 lnc-IMPAD1-24:5
5.2 lnc-CYP7A1-1:5