Transcript: lnc-DEPTOR-1:2

Basic information

LNCipedia transcript ID: lnc-DEPTOR-1:2 
LNCipedia gene ID: lnc-DEPTOR-1
Ensembl Gene ID: ENSG00000254343
Ensembl Transcript ID: ENST00000520544
Location (hg38): chr8:120052180-120056184
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 490 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520544; ENST00000520544.1; RP11-760H22.2-001; OTTHUMT00000381603.1; NONHSAT128447
Alternative gene names: ENSG00000254343; RP11-760H22.2; ENSG00000254343.2; OTTHUMG00000165053.2; AC091563.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.8553 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEPTOR-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DEPTOR-1:1
3.1 lnc-COL14A1-1:1
4.0 lnc-DEPTOR-1:2
4.1 lnc-DEPTOR-1:2
5.0 lnc-DEPTOR-1:2
5.1 lnc-NOV-1:2
5.2 lnc-DEPTOR-1:2