Transcript: DGCR11:3

Basic information

LNCipedia transcript ID: DGCR11:3 
HGNC Gene Symbol: DGCR11    
HGNC Full Gene Name: DiGeorge syndrome critical region gene 11
Ensembl Gene ID: ENSG00000273311
Ensembl Transcript ID: ENST00000609958
RefSeq ID: NR_024157
Location (hg38): chr22:19046162-19048375
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2214 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT083379; NR_024157; ENST00000609958.1; NR_024157.1
Alternative gene names: ENSG00000273311.1; DGCR11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0327 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DGCR11:3 no no no no

Available literature

  1. Gong (1996), A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DGCR14-4:1
4.0 lnc-DGCR14-4:1
4.1 lnc-DGCR14-4:1
5.0 lnc-DGCR14-4:1
5.1 DGCR11:2
5.2 DGCR11:3

loading