Transcript: lnc-DNAJC19-3:2

Basic information

LNCipedia transcript ID: lnc-DNAJC19-3:2 
LNCipedia gene ID: lnc-DNAJC19-3
Ensembl Gene ID: ENSG00000239381
Ensembl Transcript ID: ENST00000481234
Location (hg38): chr3:181534177-181535874
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 772 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005898; ENST00000481234; ENST00000481234.1; RP11-4B14.3-003; OTTHUMT00000350439.1; NONHSAT093480; ENST00000481234.5
Alternative gene names: XLOC_003344; linc-DNAJC19-2; ENSG00000239381; RP11-4B14.3; ENSG00000239381.1; OTTHUMG00000158224.1; ENSG00000239381.5; ENSG00000239381.6; AC125613.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.8396 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJC19-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAJC19-3:2
3.1 lnc-DNAJC19-3:2
4.0 lnc-DNAJC19-3:2
4.1 lnc-DNAJC19-3:2
5.0 lnc-DNAJC19-3:2
5.1 lnc-CCDC39-12:3
5.2 lnc-DNAJC19-3:2