Transcript: lnc-EGR2-2:1

Basic information

LNCipedia transcript ID: lnc-EGR2-2:1 
LNCipedia gene ID: lnc-EGR2-2
Location (hg38): chr10:63326333-63326910
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 440 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000417210.1; RP11-444I9.4-001; OTTHUMT00000048257.1; NONHSAT013602
Alternative gene names: ENSG00000226095.1; RP11-444I9.4; OTTHUMG00000018314.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5907 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EGR2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EGR2-2:1
4.0 lnc-EGR2-2:1
4.1 lnc-EGR2-2:1
5.0 lnc-EGR2-2:1
5.1 lnc-C10orf105-84:1
5.2 lnc-EGR2-2:1