Transcript: lnc-ADGRE1-1:4

Basic information

LNCipedia transcript ID: lnc-ADGRE1-1:4 
LNCipedia gene ID: lnc-ADGRE1-1
Ensembl Gene ID: ENSG00000268845
Ensembl Transcript ID: ENST00000593558
Location (hg38): chr19:6953211-6954904
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 515 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000593558.1
Alternative gene names: ENSG00000268845.1; RP11-1137G4.3; AC025278.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.9147 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADGRE1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EMR1-1:2
4.0 lnc-EMR1-1:2
4.1 lnc-EMR1-1:2
5.0 lnc-EMR1-1:2
5.1 lnc-ADGRE1-1:2
5.2 lnc-ADGRE1-1:4