Transcript: lnc-ERGIC1-2:1

Basic information

LNCipedia transcript ID: lnc-ERGIC1-2:1 
LNCipedia gene ID: lnc-ERGIC1-2
Ensembl Gene ID: ENSG00000253736
Ensembl Transcript ID: ENST00000523005
Location (hg38): chr5:172762980-172777774
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 352 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523005.1; RP11-779O18.3-001; OTTHUMT00000372516.1; NONHSAT105138
Alternative gene names: ENSG00000253736.1; RP11-779O18.3; OTTHUMG00000163303.1; AC022217.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.7819 non-coding 
CPAT coding probability 6.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERGIC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERGIC1-2:1
4.0 lnc-ERGIC1-2:1
4.1 lnc-ERGIC1-2:1
5.0 lnc-ERGIC1-2:1
5.1 lnc-ATP6V0E1-11:1
5.2 lnc-ERGIC1-2:1