Transcript: lnc-ERGIC1-2:4

Basic information

LNCipedia transcript ID: lnc-ERGIC1-2:4 
LNCipedia gene ID: lnc-ERGIC1-2
Location (hg38): chr5:172776510-172782334
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 723 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010173; NONHSAT105142
Alternative gene names: XLOC_004635; linc-ERGIC1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.8045 non-coding 
CPAT coding probability 12.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERGIC1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERGIC1-2:3
3.1 lnc-ERGIC1-2:4
4.0 lnc-ERGIC1-2:4
4.1 lnc-ERGIC1-2:4
5.0 lnc-ERGIC1-2:4
5.1 lnc-ATP6V0E1-11:5
5.2 lnc-ERGIC1-2:4