Transcript: lnc-ERV3-1-10:19

Basic information

LNCipedia transcript ID: lnc-ERV3-1-10:19 
LNCipedia gene ID: lnc-ERV3-1-10
Location (hg38): chr7:65647167-65648367
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 906 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000608973.2
Alternative gene names: ENSG00000272693.3; RP11-479O9.4; AC073107.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 92.8996 coding 
CPAT coding probability 97.93% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ERV3-1-10:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-TRIM74-105:14
5.1 lnc-TRIM74-105:14
5.2 lnc-ERV3-1-10:19