Transcript: LINC02416:3

Basic information

LNCipedia transcript ID: LINC02416:3 
HGNC Gene Symbol: LINC02416    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2416
Ensembl Gene ID: ENSG00000257924
Ensembl Transcript ID: ENST00000550019
Location (hg38): chr12:47353754-47369935
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550019; ENST00000550019.1; RP11-493L12.5-001; OTTHUMT00000405335.1; NONHSAT027917
Alternative gene names: ENSG00000257924; RP11-493L12.5; ENSG00000257924.1; OTTHUMG00000169663.1; LINC02416


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.1779 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02416:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM113B-3:1
3.1 lnc-FAM113B-3:1
4.0 lnc-FAM113B-3:1
4.1 lnc-FAM113B-3:1
5.0 lnc-FAM113B-3:1
5.1 LINC02416:2
5.2 LINC02416:3