Transcript: lnc-SH3BGRL-5:18

Basic information

LNCipedia transcript ID: lnc-SH3BGRL-5:18 
LNCipedia gene ID: lnc-SH3BGRL-5
Location (hg38): chrX:80810178-80812720
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 678 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017204; NONHSAT137728
Alternative gene names: XLOC_008020; linc-SH3BGRL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -275.9426 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3BGRL-5:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM46D-1:1
3.1 lnc-FAM46D-1:1
4.0 lnc-FAM46D-1:1
4.1 lnc-SH3BGRL-5:18
5.0 lnc-SH3BGRL-5:18
5.1 lnc-NHSL2-69:18
5.2 lnc-SH3BGRL-5:18