Transcript: lnc-BRINP3-2:1

Basic information

LNCipedia transcript ID: lnc-BRINP3-2:1 
LNCipedia gene ID: lnc-BRINP3-2
Ensembl Gene ID: ENSG00000238054
Ensembl Transcript ID: ENST00000414765
Location (hg38): chr1:188869477-188887434
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 466 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000702; ENST00000414765; ENST00000414765.1; RP11-316I3.2-001; OTTHUMT00000086294.1; NONHSAT008480
Alternative gene names: XLOC_001129; linc-PTGS2-2; ENSG00000238054; RP11-316I3.2; ENSG00000238054.1; OTTHUMG00000035545.1; AL691515.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.3061 non-coding 
CPAT coding probability 5.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRINP3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM5C-2:1
3.1 lnc-FAM5C-2:1
4.0 lnc-FAM5C-2:1
4.1 lnc-FAM5C-2:1
5.0 lnc-FAM5C-2:1
5.1 lnc-MYOG-124:1
5.2 lnc-BRINP3-2:1