Transcript: lnc-SRGAP2C-5:1

Basic information

LNCipedia transcript ID: lnc-SRGAP2C-5:1 
LNCipedia gene ID: lnc-SRGAP2C-5
Ensembl Gene ID: ENSG00000227082
Ensembl Transcript ID: ENST00000417218
Location (hg38): chr1:121396754-121463129
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3662 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000289; ENST00000417218; ENST00000417218.1; AL592494.5-001; OTTHUMT00000036739.1
Alternative gene names: XLOC_000375; linc-NBPF9-9; ENSG00000227082; AL592494.5; ENSG00000227082.1; OTTHUMG00000013092.1; CH17-437K3.1; AC244021.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 46.1613 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SRGAP2C-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM72B-3:1
3.1 lnc-FAM72B-5:1
4.0 lnc-FAM72B-5:1
4.1 lnc-FAM72B-5:1
5.0 lnc-FAM72B-5:1
5.1 lnc-FCGR1B-5:3
5.2 lnc-SRGAP2C-5:1