Transcript: lnc-SRGAP2C-5:2

Basic information

LNCipedia transcript ID: lnc-SRGAP2C-5:2 
LNCipedia gene ID: lnc-SRGAP2C-5
Location (hg38): chr1:121396880-121463120
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3610 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00001132
Alternative gene names: XLOC_000375; linc-NBPF9-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7448 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRGAP2C-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM72B-3:2
3.1 lnc-FAM72B-5:2
4.0 lnc-FAM72B-5:2
4.1 lnc-FAM72B-5:2
5.0 lnc-FAM72B-5:2
5.1 lnc-FCGR1B-5:4
5.2 lnc-SRGAP2C-5:2