Transcript: lnc-FHIT-2:1

Basic information

LNCipedia transcript ID: lnc-FHIT-2:1 
LNCipedia gene ID: lnc-FHIT-2
Ensembl Gene ID: ENSG00000242545
Ensembl Transcript ID: ENST00000486137
Location (hg38): chr3:59464330-59510678
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 698 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005780; ENST00000486137; ENST00000486137.1; RP11-719N22.2-001; OTTHUMT00000353801.1; NONHSAT090150
Alternative gene names: XLOC_003141; linc-C3orf67-3; ENSG00000242545; RP11-719N22.2; ENSG00000242545.1; OTTHUMG00000159201.1; AC126121.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.7775 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FHIT-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FHIT-2:1
3.1 lnc-FHIT-2:1
4.0 lnc-FHIT-2:1
4.1 lnc-FHIT-2:1
5.0 lnc-FHIT-2:1
5.1 lnc-DENND6A-18:1
5.2 lnc-FHIT-2:1