Transcript: LINC01933:10

Basic information

LNCipedia transcript ID: LINC01933:10 
HGNC Gene Symbol: LINC01933    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1933
Ensembl Gene ID: ENSG00000254226
Ensembl Transcript ID: ENST00000518431
Location (hg38): chr5:152195448-152270445
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518431; ENST00000518431.1; CTB-12O2.1-002; OTTHUMT00000373980.1; NONHSAT104648; ENST00000518431.5
Alternative gene names: ENSG00000254226; CTB-12O2.1; ENSG00000254226.1; OTTHUMG00000163523.1; ENSG00000254226.5; LINC01933


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.5592 non-coding 
CPAT coding probability 5.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01933:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-G3BP1-3:3
3.1 lnc-G3BP1-4:3
4.0 lnc-G3BP1-4:3
4.1 lnc-G3BP1-4:3
5.0 lnc-G3BP1-4:3
5.1 LINC01933:5
5.2 LINC01933:10