Transcript: lnc-GAP43-2:1

Basic information

LNCipedia transcript ID: lnc-GAP43-2:1 
LNCipedia gene ID: lnc-GAP43-2
Ensembl Gene ID: ENSG00000242880
Ensembl Transcript ID: ENST00000459855
Location (hg38): chr3:115251196-115285347
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 533 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000459855.1; RP11-190P13.2-001; OTTHUMT00000354479.1; NONHSAT091301
Alternative gene names: ENSG00000242880.1; RP11-190P13.2; OTTHUMG00000159303.1; AC046136.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.2931 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAP43-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAP43-2:1
4.0 lnc-GAP43-2:1
4.1 lnc-GAP43-2:1
5.0 lnc-GAP43-2:1
5.1 lnc-TIMMDC1-60:1
5.2 lnc-GAP43-2:1