Transcript: lnc-ITPR3-4:2

Basic information

LNCipedia transcript ID: lnc-ITPR3-4:2 
LNCipedia gene ID: lnc-ITPR3-4
Location (hg38): chr6:33558320-33559139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 820 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr6_3658_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 34.2572 non-coding 
CPAT coding probability 7.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPR3-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGNBP1-4:1
4.0 lnc-GGNBP1-4:1
4.1 lnc-GGNBP1-4:1
5.0 lnc-GGNBP1-4:1
5.1 lnc-TNF-99:1
5.2 lnc-ITPR3-4:2