Transcript: lnc-CASP8AP2-8:1

Basic information

LNCipedia transcript ID: lnc-CASP8AP2-8:1 
LNCipedia gene ID: lnc-CASP8AP2-8
Location (hg38): chr6:89876544-89876878
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT113969
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.7796 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CASP8AP2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GJA10-8:1
4.0 lnc-GJA10-8:1
4.1 lnc-GJA10-8:1
5.0 lnc-GJA10-8:1
5.1 lnc-PM20D2-14:1
5.2 lnc-CASP8AP2-8:1