Transcript: lnc-GMDS-4:2

Basic information

LNCipedia transcript ID: lnc-GMDS-4:2 
LNCipedia gene ID: lnc-GMDS-4
Location (hg38): chr6:1309337-1310866
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012040; NONHSAT106438
Alternative gene names: XLOC_005574; linc-HUS1B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -238.8047 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GMDS-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GMDS-3:2
3.1 lnc-GMDS-4:2
4.0 lnc-GMDS-4:2
4.1 lnc-GMDS-4:2
5.0 lnc-GMDS-4:2
5.1 lnc-ECI2-169:3
5.2 lnc-GMDS-4:2