Transcript: lnc-SLC52A1-1:2

Basic information

LNCipedia transcript ID: lnc-SLC52A1-1:2 
LNCipedia gene ID: lnc-SLC52A1-1
Location (hg38): chr17:5019215-5020093
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 582 bp
Exons: 2
Sources: Refseq - Dec 2014
Alternative transcript names: NR_120665
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -183.5144 non-coding 
CPAT coding probability 4.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC52A1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR172B-1:2
4.0 lnc-GPR172B-1:2
4.1 lnc-GPR172B-1:2
5.0 lnc-GPR172B-1:2
5.1 lnc-PHF23-42:2
5.2 lnc-SLC52A1-1:2